SNP Profiles of RB 37   View Data

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 Key

 1234567891011121314
_Input profile
TTAATTCCGGGTAAACCCAAGGAACCAA
1._RB_37_[BRA]
_______AC___AA__
2._RB_37_[BRA]
_______AC___AA__
3._RUQ_135
_______AC___AA__
4._RB_37_[BRA]
_______CC___AA__
5._RB_37_[BRA]
_______CC___AA__
6._RB_37_[BRA]
_______CC___AA__
7._RB_37_[BRA]
_______CC___AA__
8._RB_37_[BRA]
_______CC___AA__
9._RB_37_[BRA]
_______CC___AA__
10._RB_37_[BRA]
_______CC___AA__
11._RB_37_[BRA]
_______CC___AA__
12._RB_37_[BRA]
_______CC___AA__
13._RB_37_[BRA]
_______CC___AA__
14._RB_37_[BRA]
_______CC___AA__
15._GC-01-043-2-20
_______CC___AA__
16._GC-01-043-2-20
_______CC___AA__
17._GC-01-043-2-20
_______CC___AA__
18._GC-01-043-2-20
_______CC___AA__
19._GC-01-043-2-20
_______CC___AA__
20._GC-01-043-2-20
_______CC___AA__
21._GC-01-043-2-20
_______CC___AA__
22._GC-01-043-2-20
_______CC___AA__
23._GC-01-043-2-20
_______CC___AA__
24._GC-01-043-2-20
_______CC___AA__
25._GC-01-043-2-20
_______CC___AA__
26._GC-01-43-2-20
_______CC___AA__
27._GC-01-43-2-20
_______CC___AA__
 1516171819202122232425262728
_Input profile
AGCCTTACCCAAAAGGAACCCCTTGGCC
1._RB_37_[BRA]
_____AC_GG_CC____
2._RB_37_[BRA]
_____AC_GG_CC____
3._RUQ_135
_____AC_GG_CC____
4._RB_37_[BRA]
_____CC_GG_AC____
5._RB_37_[BRA]
_____CC_GG_AC____
6._RB_37_[BRA]
_____CC_GG_AC____
7._RB_37_[BRA]
_____CC_GG_AC____
8._RB_37_[BRA]
_____CC_GG_AC____
9._RB_37_[BRA]
_____CC_GG_AC____
10._RB_37_[BRA]
_____CC_GG_AC____
11._RB_37_[BRA]
_____CC_GG_AC____
12._RB_37_[BRA]
_____CC_GG_AC____
13._RB_37_[BRA]
_____CC_GG_AC____
14._RB_37_[BRA]
_____CC_GG_AC____
15._GC-01-043-2-20
AG____CC_GG_ACCC___
16._GC-01-043-2-20
AG____CC_GG_ACCC___
17._GC-01-043-2-20
AG____CC_GG_ACCC___
18._GC-01-043-2-20
AG____CC_GG_ACCC___
19._GC-01-043-2-20
AG____CC_GG_ACCC___
20._GC-01-043-2-20
AG____CC_GG_ACCC___
21._GC-01-043-2-20
AG____CC_GG_ACCC___
22._GC-01-043-2-20
AG____CC_GG_ACCC___
23._GC-01-043-2-20
AG____CC_GG_ACCC___
24._GC-01-043-2-20
AG____CC_GG_ACCC___
25._GC-01-043-2-20
AG____CC_GG_ACCC___
26._GC-01-43-2-20
AG____CC_CG_ACGG___
27._GC-01-43-2-20
AG____CC_CG_ACGG___
 2930313233343536373839404142
_Input profile
AACCCCGGAACTTTACAATTGGGGCGAA
1._RB_37_[BRA]
AA__GG______GG__AA
2._RB_37_[BRA]
AA__GG______GG__AA
3._RUQ_135
AA__GG______GG__AA
4._RB_37_[BRA]
AA__GG______GG__AA
5._RB_37_[BRA]
AA__GG______GG__AA
6._RB_37_[BRA]
AA__GG______GG__AA
7._RB_37_[BRA]
AA__GG______GG__AA
8._RB_37_[BRA]
AA__GG______GG__AA
9._RB_37_[BRA]
AA__GG______GG__AA
10._RB_37_[BRA]
AA__GG______GG__AA
11._RB_37_[BRA]
AA__GG______GG__AA
12._RB_37_[BRA]
AA__GG______GG__AA
13._RB_37_[BRA]
AA__GG______GG__AA
14._RB_37_[BRA]
AA__GG______GG__AA
15._GC-01-043-2-20
AA_TTGGAA__CC_GGGG__AA
16._GC-01-043-2-20
AA_TTGGAA__CC_GGGGAG_AA
17._GC-01-043-2-20
AA_TTGGAA__CC_GGGGAG_AA
18._GC-01-043-2-20
AA_TTGGAA__CC_GGGGAG_AA
19._GC-01-043-2-20
AA_TTGGAA__CC_GGGGAG_AA
20._GC-01-043-2-20
AA_TTGGAA__CC_GGGGAG_AA
21._GC-01-043-2-20
AA_TTGGAA__CC_GGGGAG_AA
22._GC-01-043-2-20
AA_TTGGAA__CC_GGGGAG_AA
23._GC-01-043-2-20
AA_TTGGAA__CC_GGGGAG_AA
24._GC-01-043-2-20
AA_TTGGAA__CC_GGGGAG_AA
25._GC-01-043-2-20
AA_TTGGAA__CC_GGGGAG_AA
26._GC-01-43-2-20
___CCAA__CC_CCCCAG_AA
27._GC-01-43-2-20
___CCAA__CC_CCCCAG_AA
 4344454647484950515253545556
_Input profile
CCCTAACCGGTTTTGGAACCGGGGAAGG
1._RB_37_[BRA]
____GG_____GG___
2._RB_37_[BRA]
____GG_____GG___
3._RUQ_135
____GG_CT___GG___
4._RB_37_[BRA]
____GG_TT___GG___
5._RB_37_[BRA]
____GG_TT___GG___
6._RB_37_[BRA]
____GG_TT___GG___
7._RB_37_[BRA]
____GG_TT___GG___
8._RB_37_[BRA]
____GG_TT___GG___
9._RB_37_[BRA]
____GG_TT___GG___
10._RB_37_[BRA]
____GG_TT___GG___
11._RB_37_[BRA]
____GG_TT___GG___
12._RB_37_[BRA]
____GG_TT___GG___
13._RB_37_[BRA]
____GG_TT___GG___
14._RB_37_[BRA]
____GG_TT___GG___
15._GC-01-043-2-20
CC___GG_TT___GG___
16._GC-01-043-2-20
CC___GG_TT___GG___
17._GC-01-043-2-20
CC___GG_TT___GG___
18._GC-01-043-2-20
CC___GG_TT___GG___
19._GC-01-043-2-20
CC___GG_TT___GG___
20._GC-01-043-2-20
CC___GG_TT___GG___
21._GC-01-043-2-20
CC___GG_TT___GG___
22._GC-01-043-2-20
CC___GG_TT___GG___
23._GC-01-043-2-20
CC___GG_TT___GG___
24._GC-01-043-2-20
CC___GG_TT___GG___
25._GC-01-043-2-20
CC___GG_TT___GG___
26._GC-01-43-2-20
____GG_____CC___
27._GC-01-43-2-20
____GG_____CC___
 57585960          
_Input profile
GGCCCTAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._RB_37_[BRA]
_CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._RB_37_[BRA]
_CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._RUQ_135
_CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._RB_37_[BRA]
_CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._RB_37_[BRA]
_CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._RB_37_[BRA]
_CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._RB_37_[BRA]
_CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._RB_37_[BRA]
_CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._RB_37_[BRA]
_CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._RB_37_[BRA]
_CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._RB_37_[BRA]
_CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
12._RB_37_[BRA]
_CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
13._RB_37_[BRA]
_CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
14._RB_37_[BRA]
_CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
15._GC-01-043-2-20
_CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
16._GC-01-043-2-20
_CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
17._GC-01-043-2-20
_CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
18._GC-01-043-2-20
_CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
19._GC-01-043-2-20
_CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
20._GC-01-043-2-20
_CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
21._GC-01-043-2-20
_CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
22._GC-01-043-2-20
_CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
23._GC-01-043-2-20
_CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
24._GC-01-043-2-20
_CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
25._GC-01-043-2-20
_CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
26._GC-01-43-2-20
_GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
27._GC-01-43-2-20
_GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: RB_37_[BRA] RUQ_1705

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

1._RB_37_[BRA]

95.8 %
12 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

2._RB_37_[BRA]

95.8 %
12 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

3._RB_37_[BRA] RUQ_135

92.3 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

4._RB_37_[BRA]

84.6 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1216 2 > FP
 Dapeng Zhang, 2016

5._RB_37_[BRA]

84.6 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1216 9 > FP
 Dapeng Zhang, 2016

6._RB_37_[BRA]

84.6 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1216 14 > F
 Dapeng Zhang, 2016

7._RB_37_[BRA]

84.6 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1216 11 > F
 Dapeng Zhang, 2016

8._RB_37_[BRA]

84.6 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1216 16
 Dapeng Zhang, 2016

9._RB_37_[BRA]

84.6 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1216 15
 Dapeng Zhang, 2016

10._RB_37_[BRA]

84.6 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1216 13
 Dapeng Zhang, 2016

11._RB_37_[BRA]

84.6 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1216 10
 Dapeng Zhang, 2016

12._RB_37_[BRA]

84.6 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1216 8
 Dapeng Zhang, 2016

13._RB_37_[BRA]

84.6 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1216 6
 Dapeng Zhang, 2016

14._RB_37_[BRA]

84.6 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1216 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

15._RB_37_[BRA] GC-01-043-2-20

77.5 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

16._RB_37_[BRA] GC-01-043-2-20

76.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

17._RB_37_[BRA] GC-01-043-2-20

76.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP3
 Mars, 2018

18._RB_37_[BRA] GC-01-043-2-20

76.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

19._RB_37_[BRA] GC-01-043-2-20

76.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

20._RB_37_[BRA] GC-01-043-2-20

76.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

21._RB_37_[BRA] GC-01-043-2-20

76.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

22._RB_37_[BRA] GC-01-043-2-20

76.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

23._RB_37_[BRA] GC-01-043-2-20

76.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP4
 Mars, 2018

24._RB_37_[BRA] GC-01-043-2-20

76.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

25._RB_37_[BRA] GC-01-043-2-20

76.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

26._RB_37_[BRA] GC-01-43-2-20

44.1 %
17 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 16, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

27._RB_37_[BRA] GC-01-43-2-20

44.1 %
17 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 16, Tree: 11 > FP3
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

 


  Key to SNP Markers

1TcSNP13 2TcSNP19 3TcSNP33 4TcSNP49 5TcSNP52
6TcSNP131 7TcSNP143 8TcSNP144 9TcSNP176 10TcSNP189
11TcSNP194 12TcSNP230 13TcSNP290 14TcSNP305 15TcSNP329
16TcSNP363 17TcSNP421 18TcSNP519 19TcSNP522 20TcSNP529
21TcSNP546 22TcSNP577 23TcSNP589 24TcSNP591 25TcSNP602
26TcSNP640 27TcSNP642 28TcSNP644 29TcSNP645 30TcSNP660
31TcSNP702 32TcSNP723 33TcSNP731 34TcSNP739 35TcSNP800
36TcSNP823 37TcSNP835 38TcSNP836 39TcSNP872 40TcSNP899
41TcSNP945 42TcSNP998 43TcSNP999 44TcSNP1010 45TcSNP1019
46TcSNP1053 47TcSNP1062 48TcSNP1112 49TcSNP1144 50TcSNP1205
51TcSNP1230 52TcSNP1237 53TcSNP1253 54TcSNP1275 55TcSNP1293
56TcSNP1401 57TcSNP1404 58TcSNP1458 59TcSNP1524 60TcSNP1527